University of Michigan Center for Statistical 
Genetics
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GENOME: A rapid coalescent-based whole genome simulator

If you use GENOME, please fill out the registration form.

Comments and suggestions are welcome! Please email me: lianglim@umich.edu

Download source codes and precompiled binaries, latest update v0.2 (2009.2.18)

Manual

Complete instructions and examples

Comparison with ms and cosi

Within small regions, we have compared our simulated samples with those generated by other coalescent simulators and theoretical predictions. Comparison includes LD patterns, frequency spectra and computation time.

Citation:

Liming Liang; Sebastian Zöllner; Goncalo R. Abecasis.(2007) GENOME: a rapid coalescent-based whole genome simulator. Bioinformatics 23(12):1565-7.[PDF]

 
 

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