Useful Links

Mendeley

Useful Readings

Population genetics/Coalescent Theory: Hudson R.R. Gene genealogies and the coalescent process. Oxford survyes in Evolotionary Biology. 1991 Vol 7, pp1-44. [Hudson90] Imputation: Li Y et al. (2009) Genotype Imputation, Annu. Rev. Genomics Hum. Genet. 10:387¨C406 Sequencing/Burden test: Zawistowski M et al. (2010) Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes. Am J Hum Genet. 87(5):604-17. [Matt's CMAT paper] Shendure Jay and Ji Hanlee. Next-generation DNA sequencing. Nature Biotechnology. 2008 October; 26(10). [review of sequencing techonology] Statistics/Programming: Rabiner, LR. (1989) A tutorial on Hidden Markov Models and Selected Applications in Speech Recognition. Proceedings of the IEEE. 77(2). CNVs Zöllner S, Teslovich TM (2009) Using GWAS data to identify copy number variants contributing to common complex diseases. Statistical Science 24: 530-46 E.coli Genetics Touchon M, Hoede C, Tenallion O et al. (2009) Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths. PLoS Genetics 5(1) e1000344