Yun Li's Software
The following software packages can be downloaded freely. If you find them useful, please email me: yunli@med.unc.edu. Comments and suggestions are welcome!
MACH	MArkov Chain Haplotyping: Rapid Haplotyping, Genotype Imputation from Genotype or Resequence Data
KARMA	K-tuple Alignment with Rapid Matching Algorithm
mach2qtl	Imputation-based analysis of quantitative traits
mach2dat	Imputation-based analysis of binary traits
CalcMatch	Concordance between two sets of genotype data
doseR2	Dosage r2 Calculator
ExtractImputed	Extract information for a subset of sites from imputed dataset
Liming Liang's MQLS	Imputation-based analysis of binary traits for family data without covariates